mutations

Includes 10 mutations in chr14 immunoglobulin region.

datasets

Contains tools to analyze minimal residual disease and cell-free DNA fragmentation from aligned sequencing data.
More details on the methods can be found in:
Amjad Alkodsi, Leo Meriranta, Annika Pasanen, Sirpa Lepp<c3><a4> (2020) <doi:10.1101/2020.01.27.912790>.

Amjad Alkodsi

ctDNAtools

Analyze Circulating Tumor DNA Sequencing Data

mutations function

A data frame with 10 rows and 5 columns:<dl class="dl-horizontal">
 <dt>CHROM</dt><dd>chromosome</dd>
 <dt>POS</dt><dd>genomic position</dd>
 <dt>REF</dt><dd>Reference allele</dd>
 <dt>ALT</dt><dd>Alternative allele</dd>
 <dt>PHASING</dt><dd>Common ID for mutations in phase</dd>
</dl>

Format

Example mutations data to use with ctDNAtools package — mutations

A data frame with 10 rows and 5 columns:<dl class='dl-horizontal'>
 <dt>CHROM</dt><dd>chromosome</dd>
 <dt>POS</dt><dd>genomic position</dd>
 <dt>REF</dt><dd>Reference allele</dd>
 <dt>ALT</dt><dd>Alternative allele</dd>
 <dt>PHASING</dt><dd>Common ID for mutations in phase</dd>
</dl>

mutations: Example mutations data to use with ctDNAtools package

Description

Usage

Arguments

Format