targets

Includes 1 target region in chr14.

datasets

Contains tools to analyze minimal residual disease and cell-free DNA fragmentation from aligned sequencing data.
More details on the methods can be found in:
Amjad Alkodsi, Leo Meriranta, Annika Pasanen, Sirpa Lepp<c3><a4> (2020) <doi:10.1101/2020.01.27.912790>.

Amjad Alkodsi

ctDNAtools

Analyze Circulating Tumor DNA Sequencing Data

targets function

A data frame with 1 row and 3 columns:<dl class="dl-horizontal">
 <dt>chr</dt><dd>chromosome</dd>
 <dt>start</dt><dd>start genomic position</dd>
 <dt>end</dt><dd>end genomic position</dd>
</dl>

Format

Example Genomic targets to use with ctDNAtools package — targets

A data frame with 1 row and 3 columns:<dl class='dl-horizontal'>
 <dt>chr</dt><dd>chromosome</dd>
 <dt>start</dt><dd>start genomic position</dd>
 <dt>end</dt><dd>end genomic position</dd>
</dl>

targets: Example Genomic targets to use with ctDNAtools package

Description

Usage

Arguments

Format