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ctgt (version 2.0.1)

Closed Testing with Globaltest for Pathway Analysis

Description

A shortcut procedure is proposed to implement closed testing for large-scale multiple testings, especially with the global test. This shortcut is asymptotically equivalent to closed testing and post hoc. Users could detect any possible sets of features or pathways with family-wise error rate controlled. The global test is powerful to detect associations between a group of features and an outcome of interest.

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Version

Install

install.packages('ctgt')

Monthly Downloads

261

Version

2.0.1

License

GPL (>= 2)

Maintainer

Ningning Xu

Last Published

January 16th, 2024

Functions in ctgt (2.0.1)

closed testing with globaltest

Approximated Closed Testing with Global Test
ctgt-package

'Closed Testing with Globaltest for Pathway Analysis'
p-value

p-value of globaltest
majorizing vector

The majorizing vector
true discoveries

True discoveries
non-standardized globaltest

'Non-standardized globaltest'
1-alpha quantile

The 1-alpha quantile of globaltest
internalfunctions

'Internal Functions (ctgt)'