ctl (version 1.0.0-0)

ctl.load: ctl.load - Load CTLs calculated by the D2.0 version

Description

Load CTLs calculated by the D2.0 version

Usage

ctl.load(genotypes = "ngenotypes.txt", phenotypes = "nphenotypes.txt",
output = "ctlout", from=1, to, verbose = FALSE)

Arguments

genotypes

Original datafile containing the genotypes scanned.

phenotypes

Original datafile containing the phenotypes scanned.

output

Directory containing the output files.

from

Start loading at which phenotype.

to

Continue loading untill this phenotype.

verbose

Be verbose.

Value

CTLobject, a list with at each index a CTLscan object:

• $ctls - Matrix of differential correlation scores for each trait at each marker

• $qtl - Vector of QTL lodscores for each marker (if a QTL scan was perfomed -qtl)

• $p - Vector of maximum scores per marker obtained during permutations

• $l - Matrix of LOD scores for CTL likelihood

Details

TODO

References

TODO

Examples

# NOT RUN {
  library(ctl)         # Load CTL library
# }