This function plots two continuous-time principal coordinates along with the corresponding classical principal coordinates, where the latter is aligned with the former by Procrustes transformation
procrustes.plot.mds(
obj,
points,
npoints = 500,
cols = viridis(50),
procoord = 1:2,
plotcoord = 1:2,
linewidth = 1.3,
ltitle = "time",
title = "",
samescale = FALSE,
cex.legend = 1,
GOF.method = 1,
digits = 1,
xlim = NULL,
ylim = NULL,
size.axis.title = 11,
size.axis.text = 11,
size.ltitle = 11,
size.ltext = 11,
coord_fixed = TRUE,
xlab = NULL,
ylab = NULL,
colourbar = TRUE,
...
)None; a plot is generated
an object of class "mds.ct"
matrix of classical principal coordinates,
e.g. as produced by cmdscale
number of time points (equally spaced along the range of times) at which to plot the coordinates
color scheme; viridis(50) by default
coordinates to which Procrustes transformation should be applied
which coordinates to plot
line width for the principal coordinate curve
legend title
title of the graph
logical: Should the x- and y-axes have the same range?
scaling factor for legend key
method to use for computing percent dissimilarity explained
(see argument GOF of cmdscale)
number of digits to display for percent dissimilarity explained
x- and y-limits. Ignored if samescale==TRUE.
size for axis titles
size for axis text
size for color legend title
size for color legend text
logical: Should aspect ratio be fixed to 1?
x- and y-labels. If these are NULL, the principal coordinate numbers and the percent dissimilarity explained are used as the axis labels.
logical: Should a color bar (legend) be included?
arguments passed to labs
Philip Tzvi Reiss <reiss@stat.haifa.ac.il>
procrustes.mds.ct