yeast_half_life

Half life of yeast mRNAs in Saccharomyces_cerevisiae calculated from rRNA-deleted total RNAs by Presnyak et al.

datasets

A suite of functions for rapid and flexible analysis of codon
usage bias. It provides in-depth analysis at the codon level, including
relative synonymous codon usage (RSCU), tRNA weight calculations, machine
learning predictions for optimal or preferred codons, and visualization of
codon-anticodon pairing. Additionally, it can calculate various gene-
specific codon indices such as codon adaptation index (CAI), effective
number of codons (ENC), fraction of optimal codons (Fop), tRNA adaptation
index (tAI), mean codon stabilization coefficients (CSCg), and GC contents
(GC/GC3s/GC4d). It also supports both standard and non-standard genetic
code tables found in NCBI, as well as custom genetic code tables.

Hong Zhang

cubar

Codon Usage Bias Analysis

yeast_half_life function

a data.frame with 3888 rows and three columns:<dl>
<dt>gene_id</dt>
<dd>gene id</dd><dt>gene_name</dt>
<dd>gene name</dd><dt>half_life</dt>
<dd>mRNA half life in minutes</dd>
</dl>

Format

Half life of yeast mRNAs — yeast_half_life

a data.frame with 3888 rows and three columns:<dl>
<dt>gene_id</dt>
<dd>gene id</dd>

<dt>gene_name</dt>
<dd>gene name</dd>

<dt>half_life</dt>
<dd>mRNA half life in minutes</dd>


</dl>

yeast_half_life: Half life of yeast mRNAs

Description

Usage

Arguments

Format

References

Examples