cubfits (version 0.1-2)

cubfits-package: Codon Bias Usage Fits

Description

Estimating mutation and selection coefficients on synonymous codon bias usage based on models of ribosome overhead cost (ROC). Multinomial logistic regression and Markov Chain Monte Carlo are used to estimate and predict protein production rates with/without the presence of expressions and measurement errors.

Arguments

Details

Package:
cubfits
Type:
Package
License:
Mozilla Public License 2.0
LazyLoad:
yes

The install command is simply as > R CMD INSTALL cubfits_*.tar.gz from a command mode or R> install.packages("cubfits") inside an R session.

References

https://github.com/snoweye/cubfits/

See Also

init.function(), cubfits(), cubpred(), and cubappr().

Examples

Run this code
## Not run: 
# suppressMessages(library(cubfits, quietly = TRUE))
# 
# demo(roc.train, 'cubfits', ask = F, echo = F)
# demo(roc.pred, 'cubfits', ask = F, echo = F)
# demo(roc.appr, 'cubfits', ask = F, echo = F)
# ## End(Not run)

Run the code above in your browser using DataCamp Workspace