solver: Calls ODE solver for a particular model

Description

Please refer to the Modeling Howto vignette on how to implement custom models by overloading the solver function.

Usage

solver(scenario, ...)
# S4 method for ANY
solver(scenario, ...)
# S4 method for AlgaeWeber
solver(scenario, method = "lsoda", hmax = 0.1, ...)
# S4 method for AlgaeTKTD
solver(scenario, method = "lsoda", hmax = 0.1, ...)
# S4 method for AlgaeSimple
solver(scenario, method = "lsoda", hmax = 0.1, ...)
# S4 method for DebAbj
solver(scenario, ...)
# S4 method for DebTox
solver(scenario, method = "ode45", ...)
# S4 method for DebDaphnia
solver(scenario, ...)
# S4 method for GutsRedSd
solver(scenario, ...)
# S4 method for GutsRedIt
solver(scenario, ...)
# S4 method for LemnaSetac
solver(scenario, ...)
# S4 method for LemnaSchmitt
solver(scenario, ...)
# S4 method for MyrioExp
solver(scenario, ...)
# S4 method for MyrioLog
solver(scenario, ...)

Value

data.frame with simulation results

Arguments

scenario: scenario object
...: additional parameters passed on to deSolve::ode()
method: string, numerical solver used by deSolve::ode()
hmax: numeric, maximum step length in time, see deSolve::ode()

Methods (by class)

solver(ANY): Default solver, raises an error
solver(AlgaeWeber): numerically integrates Algae_Weber models
solver(AlgaeTKTD): numerically integrates Algae_TKTD models
solver(AlgaeSimple): numerically integrates Algae_Simple models
solver(DebAbj): Numerically integrates DEB_abj models
solver(DebTox): Numerically integrates DEBtox scenarios
solver(DebDaphnia): (deprecated) Numerically integrates DEBtox_Daphnia scenarios
solver(GutsRedSd): Numerically integrates GUTS-RED-SD models
solver(GutsRedIt): Numerically integrates GUTS-RED-IT models
solver(LemnaSetac): Numerically integrates Lemna_SETAC models
solver(LemnaSchmitt): Numerically integrates Lemna_Schmitt models
solver(MyrioExp): Numerically integrates MyrioExp models
solver(MyrioLog): Numerically integrates MyrioLog models

Details

Some solvers may set reasonable default values for e.g. maximum step length in time (hmax), but not all do. Please check the model documentation for details.