cluster_plot

flowfile

channels

matrix of means obtained from celldebris_emclustering

vector of cluster weights obtained from celldebris_emclustering

cells will be assigned to a cluster if belongs to that cluster
by at least this probability. Only for plotting purposes.

classifier

plots the expression matrix of a flowframe analysed with celldebris_emclustering.

An approach to filter out and/or identify synechococcus type cyanobacteria cells from all particles measured via flow cytometry.
It combines known characteristics of these cyanobacteria strains alongside gating techniques developed by Mehrnoush, M. et al. (2015) <doi:10.1093/bioinformatics/btu677>
in the 'flowDensity' package to identify and separate these cyanobacteria cells from other cell types.
Aside the gating techniques in the 'flowDensity' package, an EM style clustering technique
is also developed to identify these cyanobacteria cell populations.

Oluwafemi Olusoji

cluster_plot: plots the expression matrix of a flowframe analysed with celldebris_emclustering.

Description

Usage

Arguments