cytofkit (version 1.4.4)

cytof_addToFCS: Add data to the original FCS files

Description

Store the new dimension transformed data and cluster data into the exprs matrix in new fcs files under analyzedFCSdir

Usage

cytof_addToFCS(data, rawFCSdir, analyzedFCSdir, transformed_cols = c("tsne_1",
  "tsne_2"), cluster_cols = c("cluster"), inLgclTrans = TRUE)

Arguments

data

The new data matrix to be added in.

rawFCSdir

The directory containing the original fcs files.

analyzedFCSdir

The directory to store the new fcs files.

transformed_cols

the column name of the dimension transformend data in data.

cluster_cols

the column name of the cluster data in data.

inLgclTrans

Boolean value decides if apply the inverse lgcl transformation to the data before saving

Value

• new fcs files stored under analyzedFCSdir