cytofkit (version 1.4.4)

cytof_progression: Progression estimation of cytof expression data

Description

Apply isomap to estimate the relationship of cell progression

Usage

cytof_progression(data, cluster, method = "isomap",
  uniformClusterSize = 500, seed = 500)

Arguments

data

Expression data matrix.

cluster

A vector of cluster results for the data.

method

Method for estimation of cell progression, isomap by default, tsne or pca.

uniformClusterSize

The down sampled size of each cluster.

seed

The seed for random down sample of the clusters.

Value

• a list includes sampleData, sampleCluster and progressionData.

Examples

data(iris)
in_data <- iris[, 1:4]
out_data <- cytof_progression(in_data, cluster = iris[,5], uniformClusterSize = 50)