RetrievePops

AnnotationObj

<p>A list containing at least one element of class 
matrix describing a sought phenotype. Each matrix should have two
columns where the name of a used marker is associated to a value
chosen between 0, 1 and 2. 0 translates to -, 1 to + and 2 to ++.</p>

phenotypes

<p>Retrieve cell populations found using Annotation.</p>

Given the hypothesis of a bi-modal distribution of cells for
each marker, the algorithm constructs a binary tree, the nodes of which are
subpopulations of cells. At each node, observed cells and markers are modeled
by both a family of normal distributions and a family of bi-modal normal mixture
distributions. Splitting is done according to a normalized difference of AIC
between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo,
Hejblum & Thiebaut (2018) <doi: 10.1002/cyto.a.23601>.

RetrievePops: Retrieve cell populations found using Annotation.

Description

Usage

Arguments

Value