plot_graph

CytomeTreeObj

Number indicating the amount by which text
on the edges should be scaled. Default is <code>1</code>.

Ecex

An integer or a string of character
to color edges of the graph. Default is <code>8</code>.

Ecolor

Number indicating the amount by which text
in the vertices should be scaled. Default is <code>.8</code>.

Vcex

A vector of class numeric or character to color
vertices of the graph. Default is <code>0</code>.

Vcolor

additional arguments to be passed to <code><a rd-options="" href="/link/plot_graph?package=cytometree&version=2.0.2" data-mini-rdoc="cytometree::plot_graph">plot_graph</a></code>

Plot the binary tree built using CytomeTree.

Given the hypothesis of a bi-modal distribution of cells for
each marker, the algorithm constructs a binary tree, the nodes of which are
subpopulations of cells. At each node, observed cells and markers are modeled
by both a family of normal distributions and a family of bi-modal normal mixture
distributions. Splitting is done according to a normalized difference of AIC
between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo,
Hejblum & Thiebaut (2018) <doi: 10.1002/cyto.a.23601>.

Boris P. Hejblum

cytometree

Automated Cytometry Gating and Annotation

plot_graph function

<dl><dt>CytomeTreeObj</dt>
<dd>An object of class CytomeTree.</dd>
<dt>Ecex</dt>
<dd>Number indicating the amount by which text
on the edges should be scaled. Default is <code>1</code>.</dd>
<dt>Ecolor</dt>
<dd>An integer or a string of character
to color edges of the graph. Default is <code>8</code>.</dd>
<dt>Vcex</dt>
<dd>Number indicating the amount by which text
in the vertices should be scaled. Default is <code>.8</code>.</dd>
<dt>Vcolor</dt>
<dd>A vector of class numeric or character to color
vertices of the graph. Default is <code>0</code>.</dd>
<dt>...</dt>
<dd>additional arguments to be passed to <code>plot_graph</code></dd></dl>

Arguments

Author

Plot the binary tree built using CytomeTree. — plot_graph

<dl>

<dt>CytomeTreeObj</dt>
<dd>An object of class CytomeTree.</dd>


<dt>Ecex</dt>
<dd>Number indicating the amount by which text
on the edges should be scaled. Default is <code>1</code>.</dd>


<dt>Ecolor</dt>
<dd>An integer or a string of character
to color edges of the graph. Default is <code>8</code>.</dd>


<dt>Vcex</dt>
<dd>Number indicating the amount by which text
in the vertices should be scaled. Default is <code>.8</code>.</dd>


<dt>Vcolor</dt>
<dd>A vector of class numeric or character to color
vertices of the graph. Default is <code>0</code>.</dd>


<dt>...</dt>
<dd>additional arguments to be passed to <code>plot_graph</code></dd>

</dl>

plot_graph: Plot the binary tree built using CytomeTree.

Description

Usage

Arguments

Author