plot_nodes

Plot the distribution of the observed cells at each node 
of the binary tree built using CytomeTree.

Given the hypothesis of a bi-modal distribution of cells for
each marker, the algorithm constructs a binary tree, the nodes of which are
subpopulations of cells. At each node, observed cells and markers are modeled
by both a family of normal distributions and a family of bi-modal normal mixture
distributions. Splitting is done according to a normalized difference of AIC
between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo,
Hejblum & Thiebaut (2018) <doi: 10.1002/cyto.a.23601>.

Boris P. Hejblum

cytometree

Automated Cytometry Gating and Annotation

Chariff Alkhassim

Boris P Hejblum

Anthony Devaux

Van Hung Huynh Tran

Melany Durand

plot_nodes function

<dl><dt>CytomeTreeObj</dt>
<dd>An object of class CytomeTree.</dd>
<dt>nodes</dt>
<dd>A list of character elements containing the name of
the nodes for which the distribution is to be plotted. Default is 
<code>NULL</code>, and plots the distribution for each node.</dd>
<dt>nodesPerCol</dt>
<dd>an integer specifying the number of plots to be
displayed per column when plotting multiple nodes at once. Default is 
<code>NULL</code>.</dd>
<dt>nodesPerRow</dt>
<dd>an integer specifying the number of plots to be
displayed per row when plotting multiple nodes at once. Default is 
<code>NULL</code>.</dd>
<dt>...</dt>
<dd>further arguments to be passed to <code>plot_grid</code>.</dd></dl>

Arguments

Author

Plot the distribution of the observed cells at each node 
of the binary tree built using CytomeTree. — plot_nodes

<dl>

<dt>CytomeTreeObj</dt>
<dd>An object of class CytomeTree.</dd>


<dt>nodes</dt>
<dd>A list of character elements containing the name of
the nodes for which the distribution is to be plotted. Default is 
<code>NULL</code>, and plots the distribution for each node.</dd>


<dt>nodesPerCol</dt>
<dd>an integer specifying the number of plots to be
displayed per column when plotting multiple nodes at once. Default is 
<code>NULL</code>.</dd>


<dt>nodesPerRow</dt>
<dd>an integer specifying the number of plots to be
displayed per row when plotting multiple nodes at once. Default is 
<code>NULL</code>.</dd>


<dt>...</dt>
<dd>further arguments to be passed to <code>plot_grid</code>.</dd>

</dl>

plot_nodes: Plot the distribution of the observed cells at each node of the binary tree built using CytomeTree.

Description

Usage

Value

Arguments

Author

Details

Examples