Calculate analytical steady states
steadyStates(model, file = NULL, smatrix = NULL, states = NULL,
rates = NULL, forcings = NULL, givenCQs = NULL, neglect = NULL,
sparsifyLevel = 2, outputFormat = "R")Either name of the csv-file or the eqnlist of the model. If NULL, specify smatrix, states and rates by hand.
Name of the file to which the steady-state equations are saved.
Read this file with readRDS.
Numeric matrix, stiochiometry matrix of the system
Character vector, state vector of the system
Character vector, flux vector of the system
Character vector with the names of the forcings
Character vector with conserved quantities. Use the format c("A + pA = totA", "B + pB = totB"). If NULL, conserved quantities are automatically calculated.
Character vector with names of states and parameters that must not be used for solving the steady-state equations
numeric, Upper bound for length of linear combinations used for simplifying the stoichiometric matrix
Define the output format. By default "R" generating dMod compatible output. To obtain an output appropriate for d2d [1] "M" must be selected.
Character vector of steady-state equations.
[1] https://bitbucket.org/d2d-development/d2d-software/wiki/Home