qtables2

ShortReadQ.
The ShortReadQ-class object to table (or dereplicate).

<code>logical(1)</code>.
Calculate average quality by first transforming to expected error rate.

qeff


Internal function to replicate ShortRead::tables functionality while also returning average quals and a map
from reads to uniques


internal

The dada2 package provides "OTU picking" functionality, but instead
of picking OTUs the DADA2 algorithm exactly infers samples sequences. The dada2
pipeline starts from demultiplexed fastq files, and outputs inferred sample
sequences and associated abundances after removing substitution and chimeric
errors. Taxonomic classification is also available via a native implementation
of the RDP classifier method.

Benjamin Callahan

dada2

Accurate, high-resolution sample inference from amplicon
sequencing data

qtables2 function

Internal function to replicate ShortRead::tables functionality while also returning average quals and a map
from reads to uniques

qtables2: Internal tables function

Description

Usage

Arguments

Value