show,dada-method

show,derep-method

object


See the general documentation of <code><a rd-options="methods" href="/link/show?package=dada2&version=1.0.3&to=methods" data-mini-rdoc="methods::show">show</a></code> method for
expected behavior.


The dada2 package provides "OTU picking" functionality, but instead
of picking OTUs the DADA2 algorithm exactly infers samples sequences. The dada2
pipeline starts from demultiplexed fastq files, and outputs inferred sample
sequences and associated abundances after removing substitution and chimeric
errors. Taxonomic classification is also available via a native implementation
of the RDP classifier method.

Benjamin Callahan

dada2

Accurate, high-resolution sample inference from amplicon
sequencing data

show,derep-method function

See the general documentation of <code><a href="show" rd-options="methods">show</a></code> method for
expected behavior.

show,derep-method: method extensions to show for dada2 objects.

Description

Usage

Arguments

Value

See Also

Examples