Learn R Programming

dartR.sim (version 0.70)

Computer Simulations of 'SNP' Data

Description

Allows to simulate SNP data using genlight objects. For example, it is straight forward to simulate a simple drift scenario with exchange of individuals between two populations or create a new genlight object based on allele frequencies of an existing genlight object.

Copy Link

Version

Install

install.packages('dartR.sim')

Monthly Downloads

619

Version

0.70

License

GPL (>= 3)

Issues

0

Pull Requests

0

Stars

0

Forks

0

Maintainer

Jose L. Mijangos

Last Published

November 20th, 2023

Functions in dartR.sim (0.70)

gl.diagnostics.sim

Comparing simulations against theoretical expectations
gl.sim.WF.run

Runs Wright-Fisher simulations
gl.sim.emigration

Simulates emigration between populations
gl.sim.create_dispersal

Creates a dispersal file as input for the function gl.sim.WF.run
interactive_sim_run

Shiny app for the input of the simulations variables
zzz

Setting up the package
gl.sim.mutate

Simulates mutations within a genlight object
gl.sim.ind

Simulates individuals based on allele frequencies
gl.sim.offspring

Simulates offspring based on alleles provided by parents
gl.sim.WF.table

Creates the reference table for running gl.sim.WF.run
interactive_reference

Shiny app for the input of the reference table for the simulations