read.dart

path to file (csv file only currently)

filename

a character specifying NAs (default is "-")

a number specifying the number of rows to be skipped. If not provided the number of rows to be skipped are "guessed" by the number of rows with "*" at the beginning.

topskip

specifies the last non genetic column (Default is "RepAvg"). Be sure to check if that is true, otherwise the number of individuals will not match. You can also specify the last column by a number.

lastmetric

Internal function called by gl.read.dart

Functions are provided that facilitate the import and analysis of
SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. The main focus is on data generated
by DarT (Diversity Arrays Technology). However, once SNP or related fragment
presence/absence data from any source is imported into a genlight object many
of the functions can be used. Functions are available for input and output of
SNP and silicodart data, for reporting on and filtering on various criteria
(e.g. CallRate, Heterozygosity, Reproducibility, maximum allele frequency).
Advanced filtering is based on Linkage Disequilibrium and HWE (Hardy-Weinberg equilibrium). Other functions
are available for visualization after PCoA (Principle Coordinate Analysis), or to facilitate transfer of data
between genlight/genind objects and newhybrids, related, phylip, structure, faststructure packages.

read.dart: Import DarT data to R

Description

Usage

Arguments

Value