dartR (version 2.0.4)

gl2geno: Converts a genlight object to geno format from package LEA

Description

The function converts a genlight object (SNP or presence/absence i.e. SilicoDArT data) into a file in the 'geno' and the 'lfmm' formats from (package LEA).

Usage

gl2geno(x, outfile = "gl_geno", outpath = tempdir(), verbose = NULL)

Arguments

x

Name of the genlight object containing the SNP or presence/absence (SilicoDArT) data [required].

outfile

File name of the output file [default 'gl_geno'].

outpath

Path where to save the output file [default tempdir(), mandated by CRAN]. Use outpath=getwd() or outpath='.' when calling this function to direct output files to your working directory.

verbose

Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2, unless specified using gl.set.verbosity].

Examples

# NOT RUN {
# SNP data
gl2geno(testset.gl)
# Tag P/A data
gl2geno(testset.gs)
# }