datacutr (version 0.2.2)

apply_cut: Applies the datacut based on the datacut flagging variables

Description

Removes any records where the datacut flagging variable, usually called DCUT_TEMP_REMOVE, is marked as "Y". Also, sets the death related variables in DM (DTHDTC and DTHFL) to missing if the death after datacut flagging variable, usually called DCUT_TEMP_DTHCHANGE, is marked as "Y".

Usage

apply_cut(dsin, dcutvar, dthchangevar)

Value

Returns the input dataframe, excluding any rows in which dcutvar is flagged as "Y". DTHDTC and DTHFL are set to missing for any records where dthchangevar is flagged as "Y". Any variables with the "DCUT_TEMP" prefix are removed.

Arguments

dsin

Name of input dataframe

dcutvar

Name of datacut flagging variable created by pt_cut and date_cut functions - usually called DCUT_TEMP_REMOVE.

dthchangevar

Name of death after datacut flagging variable created by special_dm_cut function - usually called DCUT_TEMP_DTHCHANGE.

Examples

ae <- data.frame(
  USUBJID = c("UXYZ123a", "UXYZ123b", "UXYZ123c", "UXYZ123d"),
  DCUT_TEMP_REMOVE = c("Y", "", "NA", NA)
)
ae_final <- apply_cut(dsin = ae, dcutvar = DCUT_TEMP_REMOVE, dthchangevar = DCUT_TEMP_DTHCHANGE)

dm <- data.frame(
  USUBJID = c("UXYZ123a", "UXYZ123b", "UXYZ123b"),
  DTHDTC = c("2014-10-20", "2014-10-21", "2013-09-08"),
  DTHFL = c("Y", "Y", "Y"),
  DCUT_TEMP_REMOVE = c(NA, NA, "Y"),
  DCUT_TEMP_DTHCHANGE = c(NA, "Y", "")
)
dm_final <- apply_cut(dsin = dm, dcutvar = DCUT_TEMP_REMOVE, dthchangevar = DCUT_TEMP_DTHCHANGE)