esoph

From datasets v3.2.0 by R-core R-core@R-project.org

Smoking, Alcohol and (O)esophageal Cancer

Data from a case-control study of (o)esophageal cancer in Ille-et-Vilaine, France.

Keywords: datasets

Usage

esoph

Format

A data frame with records for 88 age/alcohol/tobacco combinations.

[,1]	"agegp"	Age group
1 25--34 years
	2 35--44
		3 45--54

4 55--64
	5 65--74
		6 75+
[,2]	"alcgp"	Alcohol consumption
1 0--39 gm/day
	2 40--79
		3 80--119

4 120+	[,3]	"tobgp"
Tobacco consumption	1 0-- 9 gm/day
		2 10--19

3 20--29
	4 30+	[,4]
"ncases"	Number of cases

Source

Breslow, N. E. and Day, N. E. (1980) Statistical Methods in Cancer Research. Volume 1: The Analysis of Case-Control Studies. IARC Lyon / Oxford University Press.

Examples

library(datasets)

require(stats)
require(graphics) # for mosaicplot
summary(esoph)
## effects of alcohol, tobacco and interaction, age-adjusted
model1 <- glm(cbind(ncases, ncontrols) ~ agegp + tobgp * alcgp,
              data = esoph, family = binomial())
anova(model1)
## Try a linear effect of alcohol and tobacco
model2 <- glm(cbind(ncases, ncontrols) ~ agegp + unclass(tobgp)
                                         + unclass(alcgp),
              data = esoph, family = binomial())
summary(model2)
## Re-arrange data for a mosaic plot
ttt <- table(esoph$agegp, esoph$alcgp, esoph$tobgp)
o <- with(esoph, order(tobgp, alcgp, agegp))
ttt[ttt == 1] <- esoph$ncases[o]
tt1 <- table(esoph$agegp, esoph$alcgp, esoph$tobgp)
tt1[tt1 == 1] <- esoph$ncontrols[o]
tt <- array(c(ttt, tt1), c(dim(ttt),2),
            c(dimnames(ttt), list(c("Cancer", "control"))))
mosaicplot(tt, main = "esoph data set", color = TRUE)

Documentation reproduced from package datasets, version 3.2.0, License: Part of R 3.2.0

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