dcGOR (version 1.0.2)

SCOP.fa: SCOP domain families (fa).

Description

An object of class "InfoDataFrame" that contains information on SCOP domain families (fa).

Usage

data(SCOP.fa)

Value

• an object of class InfoDataFrame. It has slots for data and dimLabels:
  • data: a data.frame containing information about 2223 domains (in rows), with 3 columns ("id" for SCOP sunid, and "level" for SCOP level, "description" for SCOP description)
• dimLabels: a character describing labels for rows and columns in data

References

Morais et al. (2011) SUPERFAMILY 1.75 including a domain-centric gene ontology method. Nucleic Acids Res, 39(Database issue):D427-34. Andreeva et al. (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res, 36(Database issue):D419-425

See Also

InfoDataFrame-class

Examples

# load data
data(SCOP.fa)
SCOP.fa
# retrieve the dimension
dim(SCOP.fa)
# retrieve names of columns
colNames(SCOP.fa)
# retrieve the first 5 rows of data
Data(SCOP.fa)[1:5,]