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dcGSA (version 1.0.1)

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles

Description

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles. In longitudinal studies, the gene expression profiles were collected at each visit from each subject and hence there are multiple measurements of the gene expression profiles for each subject. The dcGSA package could be used to assess the associations between gene sets and clinical outcomes of interest by fully taking advantage of the longitudinal nature of both the gene expression profiles and clinical outcomes.

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Version

Version

1.0.1

License

GPL-2

Maintainer

Jiehuan Sun

Last Published

February 15th, 2017

Functions in dcGSA (1.0.1)

dcGSA

Perform gene set analysis for longitudinal gene expression profiles.
dcGSAtest

dcGSA test data
readGMT

Read gene set file in gmt format
LDcov

Calculate longitudinal distance covariance statistics.