revals

Precalculated parameter grids for a range of values of M (from 1 to 5).

datasets

An implementation of Dcifer (Distance for complex infections: fast estimation of relatedness), an identity by descent (IBD) based method to calculate genetic relatedness between polyclonal infections from biallelic and multiallelic data. The package includes functions that format and preprocess the data, implement the method, and visualize the results.
Gerlovina et al. (2022) <doi:10.1093/genetics/iyac126>.

Inna Gerlovina

dcifer

Genetic Relatedness Between Polyclonal Infections

revals function

A list of length 5, where each element corresponds to a single value
of M and is a matrix with M rows. Each column of a matrix is a
r1 = ... =
rM) combination.

revals: Parameter grid

Description

Usage

Arguments

Format