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dclone (version 1.3-0)

Data Cloning and MCMC Tools for Maximum Likelihood Methods

Description

Low level functions for implementing maximum likelihood estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods with support for JAGS, WinBUGS and OpenBUGS. With some functions for parallel MCMC computations.

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Version

Install

install.packages('dclone')

Monthly Downloads

681

Version

1.3-0

License

GPL-2

Maintainer

Peter Solymos

Last Published

January 3rd, 2011

Functions in dclone (1.3-0)

bugs.fit

Fit BUGS models with cloned data
nclones

Number of Clones
dctable

Retrieve descriptive statistics from fitted objects to evaluate convergence
clusterSize

Optimizing the number of workers
snowWrapper

Parallel wrapper function to call from within a function
dclone-package

Data Cloning
dcoptions

Setting Options
ovenbird

Abundances of ovenbird in Alberta
dc.parfit

Parallel model fitting with data cloning
update.mcmc.list

Automatic updating of an MCMC object
dclone

Cloning R objects
coef.mcmc.list

Methods for the 'mcmc.list' class
jags.fit

Fit JAGS models with cloned data
regmod

Exemplary MCMC list object
jags.parfit

Parallel computing with JAGS
dc.fit

Iterative model fitting with data cloning
mcmcapply

Calculations on 'mcmc.list' objects
errlines

Plot error bars
make.symmetric

Make a square matrix symmetric by averaging.
clusterSplitSB

Size balancing
write.jags.model

Write and remove model file
lambdamax.diag

Maximum Eigenvalue of the Posterior Variance-Covariance Matrix