ddgraph (version 1.16.0)

FurlongDataSet-class: Data class for the Furlong dataset...

Description

Data class for the Furlong dataset

Slots

targetClasses:

(factor) the target class names

Methods

signalMatrix

signature(object = "FurlongDataSet"): Retrieve the matrix with raw signal values

classLabels

signature(object = "FurlongDataSet"): Retrieve the vector of class labels (as factors)

toDDDataSet

signature(obj = "FurlongDataSet"): Make the DDDataSet objects by selecting different tissues

Details

A class to hold data from (Zizen 2009) paper (Supp Table 8). This class contains methods to convert it to both binary and continuous DDDataSet objects.

References

Robert P. Zinzen et al., "Combinatorial binding predicts spatio-temporal cis-regulatory activity," Nature 462, no. 7269 (November 5, 2009): 65-70.