chytrid

Replicated spore counts of an experimental culture of the chytrid fungus Batrachochytrium dendrobatidis.
This dataset is a subset of the observations from the experimental study conducted by Voyles et al. (2012).

data

A Bayesian framework for parameter inference in differential equations.
This approach offers a rigorous methodology for parameter inference as well as
modeling the link between unobservable model states and parameters, and
observable quantities. Provides templates for the DE model, the
observation model and data likelihood, and the model parameters and their prior
distributions. A Markov chain Monte Carlo (MCMC) procedure processes these inputs
to estimate the posterior distributions of the parameters and any derived
quantities, including the model trajectories. Further functionality is provided
to facilitate MCMC diagnostics and the visualisation of the posterior distributions
of model parameters and trajectories.

Philipp H Boersch-Supan

deBInfer

Bayesian Inference for Differential Equations

Leah R Johnson

Sadie J Ryan

chytrid function

A data.frame with 76 rows and two columns<dl>
 <dt>time</dt>
<dd>days since the start of the experiment</dd> <dt>count</dt>
<dd>count of zoospores (x 1e4)</dd>
</dl>

Format

Chytrid fungus data set — chytrid

A data.frame with 76 rows and two columns<dl>
 <dt>time</dt>
<dd>days since the start of the experiment</dd>

 <dt>count</dt>
<dd>count of zoospores (x 1e4)</dd>


</dl>

chytrid: Chytrid fungus data set

Description

Arguments

Format

References