propose_joint_rev

A Bayesian framework for parameter inference in differential equations.
This approach offers a rigorous methodology for parameter inference as well as
modeling the link between unobservable model states and parameters, and
observable quantities. Provides templates for the DE model, the
observation model and data likelihood, and the model parameters and their prior
distributions. A Markov chain Monte Carlo (MCMC) procedure processes these inputs
to estimate the posterior distributions of the parameters and any derived
quantities, including the model trajectories. Further functionality is provided
to facilitate MCMC diagnostics and the visualisation of the posterior distributions
of model parameters and trajectories.

Philipp H Boersch-Supan

deBInfer

Bayesian Inference for Differential Equations

Leah R Johnson

Sadie J Ryan

propose_joint_rev function

<dl><dt>samps</dt>
<dd>current sample of the MCMC chain</dd>
<dt>s.ps</dt>
<dd>debinfer_parlist object representing the parameters that are to be proposed</dd>
<dt>cov.mat</dt>
<dd>debinfer_cov object; covariance matrix for the proposal</dd></dl>

Arguments

propose_joint — propose_joint_rev

<dl>

<dt>samps</dt>
<dd>current sample of the MCMC chain</dd>


<dt>s.ps</dt>
<dd>debinfer_parlist object representing the parameters that are to be proposed</dd>


<dt>cov.mat</dt>
<dd>debinfer_cov object; covariance matrix for the proposal</dd>

</dl>

propose_joint_rev: propose_joint

Description

Usage

Arguments

Details