sigmoidVarKernExtractParam

kern

only.values

untransformed.values

<p>Auxiliary function for sigmoid kernel (used by gptk)</p>

Efficient Bayesian parameter inference for systems of ordinary
differential equations. The inference is based on adaptive gradient matching
(AGM, Dondelinger et al. 2013 <http://proceedings.mlr.press/v31/dondelinger13a.pdf>,
Macdonald 2017 <http://theses.gla.ac.uk/7987/1/2017macdonaldphd.pdf>),
which offers orders-of-magnitude improvements in computational
efficiency over standard methods that require solving the differential
equation system. Features of the package include flexible specification
of custom ODE systems as R functions, support for missing variables,
Bayesian inference via population MCMC.

Frank Dondelinger

deGradInfer

Parameter Inference for Systems of Differential Equation

Benn Macdonald

sigmoidVarKernExtractParam function

Auxiliary function for sigmoid kernel (used by gptk) — sigmoidVarKernExtractParam

Auxiliary function for sigmoid kernel (used by gptk)

sigmoidVarKernExtractParam: Auxiliary function for sigmoid kernel (used by gptk)

Description

Usage

Arguments

Value