A wrapper function to deploy the fastq and fata output functions.
write_wrapper(x, ...)# S3 method for DNAseq
write_wrapper(x, ..., outfile = "denoised.fastq",
outformat = "fastq", append = TRUE, keep_phred = TRUE,
phred_placeholder = "#")
a DNAseq class object.
additional arguments to be passed between methods.
The name of the file to output the data to. Default is "denoised.fasta".
The format of the output data, either fasta for fastq. Default is fastq.
Should the ccs consensus sequence be appended to the output file?(TRUE) Or overwrite the file?(FALSE) Default is TRUE.
Should the original PHRED scores be kept in the output? Default is TRUE.
The character to input for the phred score line. Default is '#'.
a class object of code"DNAseq"