deconstructSigs (version 1.8.0)

getError: Calculates error

Description

Finds error between calculated trinucleotide context fractions and inputted ones

Usage

getError(tumor, signatures, w)

Arguments

tumor

Actual trinucleotide context fractions

signatures

Signatures matrix

w

Weights matrix

Value

Returns the sum squared error between calculated and actual trinucleotide context fractions