deepSNV (version 1.18.3)

test: Get test counts

Description

Convenience function to obtain the test counts from a deepSNV object.

Usage

test(deepSNV, ...)
"test"(deepSNV, total = FALSE)

Arguments

deepSNV

a deepSNV-class object

total

Logical. If true the sum of both strands is returned

...

Additional param passed to specific methods

Value

A matrix with the absolute frequencies summed over both strands.

Examples

data(HIVmix)
test(HIVmix)[1:10,]
test(HIVmix, total=TRUE)[1:10,]