defrostR v1.0.0
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A Tool for Standardizing Amphibian Taxonomy
Provides a workflow for combining amphibian taxonomic data sets from different sources that use different taxonomic nomenclature, by suggesting the most current nomenclature used by the Amphibian Species of the World: an Online Reference, Frost (2017) <http://research.amnh.org/herpetology/amphibia/index.html> for a given input query of species names. It can also be used to extract specific systematic information (e.g. species downstream of a given taxonomic level).
Functions in defrostR
| Name | Description | |
| amphweb | AmphibiaWeb Taxonomy | |
| aswStats | Get summary statistics of current taxonomy | |
| defrost | Submit query to find updates in nomenclautre | |
| getSynonyms | Compile dataframe of all synonyms listed on Amphibian Species of the World | |
| asw_synonyms | Amphibian Species of the World synonyms | |
| asw_taxonomy | Amphibian Species of the World Taxonomy | |
| getTaxonomy | Compile amphibian taxonomy following the Amphibian Species of the World | |
| synonymReport | Get summary report of "defrosted" query | |
| No Results! | ||
Vignettes of defrostR
| Name | ||
| defrostR_tutorial.Rmd | ||
| No Results! | ||
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Details
| Type | Package |
| Date | 2017-08-05 |
| VignetteBuilder | knitr |
| License | GPL (>= 2.0) |
| Encoding | UTF-8 |
| LazyData | true |
| RoxygenNote | 6.0.1 |
| URL | http://github.com/hcliedtke/defrostR |
| BugReports | http://github.com/hcliedtke/defrostR/issues |
| NeedsCompilation | no |
| Packaged | 2017-08-09 12:11:31 UTC; L9HRVWMTX |
| Repository | CRAN |
| Date/Publication | 2017-08-09 12:22:18 UTC |
| suggests | knitr , rmarkdown |
| depends | R (>= 3.0.1) , XML |
| Contributors | H. Liedtke |
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