defrostR v1.0.0

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A Tool for Standardizing Amphibian Taxonomy

Provides a workflow for combining amphibian taxonomic data sets from different sources that use different taxonomic nomenclature, by suggesting the most current nomenclature used by the Amphibian Species of the World: an Online Reference, Frost (2017) <http://research.amnh.org/herpetology/amphibia/index.html> for a given input query of species names. It can also be used to extract specific systematic information (e.g. species downstream of a given taxonomic level).

Functions in defrostR

Name Description
amphweb AmphibiaWeb Taxonomy
aswStats Get summary statistics of current taxonomy
defrost Submit query to find updates in nomenclautre
getSynonyms Compile dataframe of all synonyms listed on Amphibian Species of the World
asw_synonyms Amphibian Species of the World synonyms
asw_taxonomy Amphibian Species of the World Taxonomy
getTaxonomy Compile amphibian taxonomy following the Amphibian Species of the World
synonymReport Get summary report of "defrosted" query
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Vignettes of defrostR

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defrostR_tutorial.Rmd
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Details

Type Package
Date 2017-08-05
VignetteBuilder knitr
License GPL (>= 2.0)
Encoding UTF-8
LazyData true
RoxygenNote 6.0.1
URL http://github.com/hcliedtke/defrostR
BugReports http://github.com/hcliedtke/defrostR/issues
NeedsCompilation no
Packaged 2017-08-09 12:11:31 UTC; L9HRVWMTX
Repository CRAN
Date/Publication 2017-08-09 12:22:18 UTC
suggests knitr , rmarkdown
depends R (>= 3.0.1) , XML
Contributors H. Liedtke

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