geophagus_delims

This is a data frame containing species delimitation partitions for all the
137 unique haplotypes of geophagus generated using
functions contained in this package. Use report_delim
to check number of lineages per method.

datasets

Helpers functions to process, analyse, and visualize the output of
single locus species delimitation methods.
For full functionality, please install suggested software at
<https://legallab.github.io/delimtools/articles/install.html>.

Pedro Bittencourt

delimtools

Helper Functions for Species Delimitation Analysis

Rupert Collins

Tomas Hrbek

geophagus_delims function

A dataframe with 137 rows and 9 columns:<dl>
<dt>labels</dt>
<dd>Unique haplotype labels</dd><dt>abgd</dt>
<dd>species partitions for <code>ABGD</code> method</dd><dt>asap</dt>
<dd>species partitions for <code>ASAP</code> method</dd><dt>bgmyc</dt>
<dd>species partitions for <code>bGMYC</code> method</dd><dt>gmyc</dt>
<dd>species partitions for <code>GMYC</code> method</dd><dt>locmin</dt>
<dd>species partitions for <code>locmin</code> method</dd><dt>morph</dt>
<dd>species partitions following NCBI taxonomy</dd><dt>mptp</dt>
<dd>species partitions for <code>mPTP</code> method</dd><dt>ptp</dt>
<dd>species partitions for <code>PTP</code> method</dd>
</dl>

Format

Geophagus Eartheaters Species Partitions — geophagus_delims

A dataframe with 137 rows and 9 columns:<dl>
<dt>labels</dt>
<dd>Unique haplotype labels</dd>

<dt>abgd</dt>
<dd>species partitions for <code>ABGD</code> method</dd>

<dt>asap</dt>
<dd>species partitions for <code>ASAP</code> method</dd>

<dt>bgmyc</dt>
<dd>species partitions for <code>bGMYC</code> method</dd>

<dt>gmyc</dt>
<dd>species partitions for <code>GMYC</code> method</dd>

<dt>locmin</dt>
<dd>species partitions for <code>locmin</code> method</dd>

<dt>morph</dt>
<dd>species partitions following NCBI taxonomy</dd>

<dt>mptp</dt>
<dd>species partitions for <code>mPTP</code> method</dd>

<dt>ptp</dt>
<dd>species partitions for <code>PTP</code> method</dd>


</dl>

geophagus_delims: Geophagus Eartheaters Species Partitions

Description

Usage

Arguments

Format