haplotype_tbl

<code>haplotype_tbl()</code> returns a <a href="https://tibble.tidyverse.org/reference/tbl_df-class.html">tbl_df</a> summarising
all unique haplotype frequencies and duplicates into a single row.

Helpers functions to process, analyse, and visualize the output of
single locus species delimitation methods.
For full functionality, please install suggested software at
<https://legallab.github.io/delimtools/articles/install.html>.

Pedro Bittencourt

delimtools

Helper Functions for Species Delimitation Analysis

Rupert Collins

Tomas Hrbek

haplotype_tbl function

<dl><dt>dna</dt>
<dd>an object of class DNAbin.</dd>
<dt>clean</dt>
<dd>logical. Whether to remove or not remove non ACTG bases from alignment.</dd>
<dt>collapseSubstrings</dt>
<dd>logical. Whether to collapse or not collapse shorter but identical sequences.</dd>
<dt>verbose</dt>
<dd>logical. Returns a warning if any sequence contains non ACTG bases.
See clean_dna for details.</dd></dl>

Arguments

Rupert A. Collins, Pedro S. Bittencourt.

Author

<code>haplotype_tbl()</code> returns a <a href='https://tibble.tidyverse.org/reference/tbl_df-class.html'>tbl_df</a> summarising
all unique haplotype frequencies and duplicates into a single row.

Summarise Haplotypes Down to One Row — haplotype_tbl

<dl>

<dt>dna</dt>
<dd>an object of class DNAbin.</dd>


<dt>clean</dt>
<dd>logical. Whether to remove or not remove non ACTG bases from alignment.</dd>


<dt>collapseSubstrings</dt>
<dd>logical. Whether to collapse or not collapse shorter but identical sequences.</dd>


<dt>verbose</dt>
<dd>logical. Returns a warning if any sequence contains non ACTG bases.
See clean_dna for details.</dd>

</dl>

haplotype_tbl: Summarise Haplotypes Down to One Row

Description

Usage

Value

Arguments

Author

Details

Examples