delimtools (version 0.2.0)

report_delim: Report Unique Species Partitions

Description

report_delim() reports the number of unique species partitions in delim.

Usage

report_delim(delim, verbose = TRUE)

Value

an object of class tbl_df].

Arguments

delim

Output from any *_tbl() (e.g. gmyc_tbl), delim_join or delim_consensus.

verbose

Logical. If TRUE, returns a message and a tabulated summary of delim.

Author

Rupert A. Collins, Pedro S. Bittencourt

Details

For each column in delim, report_delim() will calculate the number of unique partitions and print them to Console. If delim is an output from *_tbl(), report_delim() will get unique species partitions using vec_unique_count. If delim is an output from delim_join or delim_consensus, values are summarized by using n_distinct with na.rm = TRUE. This is to prevent any columns with NA values to be interpreted as species partitions.

Examples

# report geophagus delimitations
report_delim(geophagus_delims)