deltaccd (version 1.0.2)

Quantify Rhythmic Gene Co-Expression Relative to a Reference

Description

Infer progression of circadian rhythms in transcriptome data in which samples are not labeled with time of day and coverage of the circadian cycle may be incomplete. See Shilts et al. (2018) .

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Install

install.packages('deltaccd')

Monthly Downloads

278

Version

1.0.2

License

GPL-2

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Repository

https://github.com/hugheylab/deltaccd

Homepage

https://deltaccd.hugheylab.org

Maintainer

Jake Hughey

Last Published

February 11th, 2022

Functions in deltaccd (1.0.2)

calcDeltaCCD

Calculate delta clock correlation distance.

plotRefHeatmap

Visualize the reference pattern of gene co-expression.

plotHeatmap

Visualize gene co-expression.

calcCCD

Calculate clock correlation distance (CCD).

GSE19188

Gene expression data for GSE19188.

getRefCor

Retrieve the reference correlation matrix for circadian gene co-expression.