compare_sample_subsets

Compares sample subset x against sample subset y

Multi-sample algorithm based on contigs and coverage values, to
infer the relative distances of contigs from the replication origin and to
accurately compare bacterial growth rates between samples. Yuan Gao and
Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.

Charlie Bushman

demic

Dynamic Estimator of Microbial Communities

Yuan Gao

compare_sample_subsets function

<dl><dt>est_ptrs_x</dt>
<dd>PTR estimates from sample subset x</dd>
<dt>est_ptrs_y</dt>
<dd>PTR estimates from sample subset y</dd>
<dt>pipeline_x</dt>
<dd>pipeline for sample subset x</dd>
<dt>pipeline_y</dt>
<dd>pipeline for sample subset y</dd>
<dt>cor_cutoff</dt>
<dd>the correlation cutoff</dd>
<dt>max_cor</dt>
<dd>the max correlation</dd></dl>

Arguments

Compares sample subset x against sample subset y — compare_sample_subsets

<dl>

<dt>est_ptrs_x</dt>
<dd>PTR estimates from sample subset x</dd>


<dt>est_ptrs_y</dt>
<dd>PTR estimates from sample subset y</dd>


<dt>pipeline_x</dt>
<dd>pipeline for sample subset x</dd>


<dt>pipeline_y</dt>
<dd>pipeline for sample subset y</dd>


<dt>cor_cutoff</dt>
<dd>the correlation cutoff</dd>


<dt>max_cor</dt>
<dd>the max correlation</dd>

</dl>

compare_sample_subsets: Compares sample subset x against sample subset y

Description

Usage

Value

Arguments