contig_pca

A function to return the first dimension of PCA on an input matrix

Multi-sample algorithm based on contigs and coverage values, to
infer the relative distances of contigs from the replication origin and to
accurately compare bacterial growth rates between samples. Yuan Gao and
Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.

Charlie Bushman

demic

Dynamic Estimator of Microbial Communities

Yuan Gao

contig_pca function

<dl><dt>X</dt>
<dd>a matrix to undergo PCA</dd></dl>

Arguments

A function to return the first dimension of PCA on an input matrix — contig_pca

<dl>

<dt>X</dt>
<dd>a matrix to undergo PCA</dd>

</dl>

contig_pca: A function to return the first dimension of PCA on an input matrix

Description

Usage

Value

Arguments