est_ptr

Estimate PTRs using all input data as well as using subsets of contigs and samples

Multi-sample algorithm based on contigs and coverage values, to
infer the relative distances of contigs from the replication origin and to
accurately compare bacterial growth rates between samples. Yuan Gao and
Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.

Charlie Bushman

demic

Dynamic Estimator of Microbial Communities

Yuan Gao

est_ptr function

<dl><dt>X</dt>
<dd>dataframe with coverage matrix
(column names: "log_cov", "GC_content", "sample", "contig", "length")</dd></dl>

Arguments

Estimate PTRs using all input data as well as using subsets of contigs and samples — est_ptr

<dl>

<dt>X</dt>
<dd>dataframe with coverage matrix
(column names: "log_cov", "GC_content", "sample", "contig", "length")</dd>

</dl>

est_ptr: Estimate PTRs using all input data as well as using subsets of contigs and samples

Description

Usage

Value

Arguments

Examples