reshape_filtered

A function for reshape to facilitate PCA, removing all contigs with missing values for designated samples

Multi-sample algorithm based on contigs and coverage values, to
infer the relative distances of contigs from the replication origin and to
accurately compare bacterial growth rates between samples. Yuan Gao and
Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.

Charlie Bushman

demic

Dynamic Estimator of Microbial Communities

Yuan Gao

reshape_filtered function

<dl><dt>samples_filtered</dt>
<dd>a vector of samples</dd>
<dt>Z</dt>
<dd>a matrix of coverage</dd></dl>

Arguments

A function for reshape to facilitate PCA, removing all contigs with missing values for designated samples — reshape_filtered

<dl>

<dt>samples_filtered</dt>
<dd>a vector of samples</dd>


<dt>Z</dt>
<dd>a matrix of coverage</dd>

</dl>

reshape_filtered: A function for reshape to facilitate PCA, removing all contigs with missing values for designated samples

Description

Usage

Value

Arguments