Get the x-y coordiantes of a dendrogram's nodes
Cophenetic correlation between two trees
Interactively rotate a tree object
Calculating Fowlkes-Mallows Index
Calculating Fowlkes-Mallows index in R
Sample a tree
Counts the number of nodes (Vertices) in a tree
Checks if the value is and empty list()
Adjust the order of one dendrogram based on another (using labels)
Is the object of class phylo
Remove all edgePar values from a dendrogram's branches
assign_values_to_leaves_nodePar
Assign values to nodePar of dendrogram's leaves
Tanglegram plot
Bk permutation - Calculating Fowlkes-Mallows Index for two dendrogram
Calculating Fowlkes-Mallows Index under H0
untangle dendrograms
Get height attributes from a dendrogram
Cut a dendrogram - and run a function on the output
assign_values_to_nodes_nodePar
Assign values to nodePar of dendrogram's nodes
Flip leaves
Check if all the elements in a vector are unique
Trimms one leaf from a dendrogram
Draw Rectangles Around a Dendrogram's Clusters
fix_members_attr.dendrogram
Fix members attr in a dendrogram
Convert dendrogram Objects to Class hclust
Shows the significant branches in a dendrogram, based on a pvclust object
Sort the values level in a vector
assign_dendextend_options
Populates dendextend functions into dendextend_options
Intersect trees
Fix rank of leaves order values in a dendrogram
Flatten the branches of a dendrogram's root
Remove all nodePar values from a dendrogram's leaves
unclass an entire dendrogram tree
cutree for dendrogram (by 1 height only!)
get attributes from the dendrogram's root branches
Color tree's labels according to sub-clusters
Add colored bars to a dendrogram
Duplicate a leaf X times
Random rotation of trees
pvclust_show_signif_gradient
Shows the gradient of significance of branches in a dendrogram, based on a pvclust object
Raise the height of a dendrogram tree
Measures entanglement between two trees
match_order_dendrogram_by_old_order
Adjust the order of one dendrogram based on another (using order)
Plotting a left-tip-adjusted horizontal dendrogram
Calculating Fowlkes-Mallows index using the profdpm R package
cutree for dendrogram (by 1 k value only!)
Get height attributes from a dendrogram's children
Set (/update) features to a dendrogram
Tries to run DendSer on a dendrogram
Get or set current defaults for d3dendrogram
A plot S3 method for dendlist
Sorts a distance matrix by rows and columns
Pipe an object forward into a function call/expression.
Rank branches' heights
Last Observation Carried Forward
Untangle - random search
Find lowest common branch were the two items are shared
Checks if an object is of class dendlist
unbranch trees
Hang dendrogram leaves
Ordering of the Leaves in a hclust Dendrogram
Counts the number of leaves in a tree
Turns a factor into a number
Identify Clusters in a Dendrogram (not hclust)
Try to coerce something into a dendlist
Creating a dendlist object from several dendrograms
Find which nodes satisfies a condition
Rotate a tree object
Cut a Tree (Dendrogram/hclust/phylo) into Groups of Data
Return the leaf Colors of a dendrogram
Retrieve/assign colors to the labels of a dendrogram
Check if numbers are natural
Plot dendrogram to webpage and view.
Bk - Calculating Fowlkes-Mallows Index for two dendrogram
Baker's Gamma correlation coefficient
recursivly apply a function on a list
Get attributes of dendrogram's nodes
branches_attr_by_clusters
Change col/lwd/lty of branches based on clusters
assign_values_to_branches_edgePar
Assign values to edgePar of dendrogram's branches
Tries to run DendSer on a dendrogram
Rotates dend based on DendSer
Access to dendextend_options
Sorts two clusters vector by their names
Color tree's branches according to sub-clusters
untangle_step_rotate_1side
Stepwise untangle one tree compared to another
Which height will result in which k for a dendrogram
Counts the number of terminal nodes (merging 0 nodes!)
order.dendrogram<- assignment operator
"label" assignment operator
Change col/lwd/lty of branches matching labels condition
Is the object of class dendrogram
untangle_step_rotate_2side
Stepwise untangle two trees one at a time
Which node is a leaf?
Prunes a tree (using leaves' labels)
Is the object of class hclust
bakers_gamma_for_2_k_matrix
Bakers Gamma for two k matrices
Bk plot - ploting the Fowlkes-Mallows Index of two dendrogram for various k's
all_couple_rotations_at_k
Rotate tree branches for k
Functions for extending dendrogram objects
Get/set attributes of dendrogram's leaves