Calculating Fowlkes-Mallows Index
Color tree's branches according to sub-clusters
Change col/lwd/lty of branches matching labels condition
Turns a factor into a number
Bk plot - ploting the Fowlkes-Mallows Index of two dendrogram for various k's
all_couple_rotations_at_k
Rotate tree branches for k
Fix rank of leaves order values in a dendrogram
assign_values_to_leaves_edgePar
Assign values to edgePar of dendrogram's leaves
Interactively rotate a tree object
get attributes from the dendrogram's root branches
Ordering of the Leaves in a hclust Dendrogram
Calculating Fowlkes-Mallows index using the profdpm R package
cutree for dendrogram (by 1 height only!)
Checks if an object is of class dendlist
Cut a dendrogram - and run a function on the output
Raise the height of a dendrogram tree
Cophenetic correlation between two trees
Creating a dendlist object from several dendrograms
Sample a tree
untangle dendrograms
Checks if the value is and empty list()
Find lowest common branch were the two items are shared
Color tree's labels according to sub-clusters
Measures entanglement between two trees
cutree for dendrogram (by 1 k value only!)
unbranch trees
pvclust_show_signif_gradient
Shows the gradient of significance of branches in a dendrogram, based on a pvclust object
Adjust the order of one dendrogram based on another (using labels)
Counts the number of leaves in a tree
Find which nodes satisfies a condition
Hang dendrogram leaves
Random rotation of trees
Baker's Gamma correlation coefficient
Which node is a leaf?
Is the object of class phylo
Intersect trees
"label" assignment operator
Sorts a distance matrix by rows and columns
recursivly apply a function on a list
Get attributes of dendrogram's nodes
Counts the number of terminal nodes (merging 0 nodes!)
Calculating Fowlkes-Mallows Index under H0
fix_members_attr.dendrogram
Fix members attr in a dendrogram
Duplicate a leaf X times
Rotate a tree object
Flip leaves
Check if all the elements in a vector are unique
Flatten the branches of a dendrogram's root
bakers_gamma_for_2_k_matrix
Bakers Gamma for two k matrices
Cut a Tree (Dendrogram/hclust/phylo) into Groups of Data
match_order_dendrogram_by_old_order
Adjust the order of one dendrogram based on another (using order)
Tries to run DendSer on a dendrogram
Plotting a left-tip-adjusted horizontal dendrogram
Get the x-y coordiantes of a dendrogram's nodes
branches_attr_by_clusters
Change col/lwd/lty of branches based on clusters
Bk - Calculating Fowlkes-Mallows Index for two dendrogram
Counts the number of nodes (Vertices) in a tree
Tries to run DendSer on a dendrogram
Trimms one leaf from a dendrogram
assign_values_to_nodes_nodePar
Assign values to nodePar of dendrogram's nodes
Retrieve/assign colors to the labels of a dendrogram
Bk permutation - Calculating Fowlkes-Mallows Index for two dendrogram
Rank branches' heights
Untangle - random search
Remove all nodePar values from a dendrogram's leaves
Set (/update) features to a dendrogram
Calculating Fowlkes-Mallows index in R
Get/set attributes of dendrogram's leaves
Identify Clusters in a Dendrogram (not hclust)
Prunes a tree (using leaves' labels)
Sort the values level in a vector
Get height attributes from a dendrogram
Remove all edgePar values from a dendrogram's branches
unclass an entire dendrogram tree
assign_values_to_branches_edgePar
Assign values to edgePar of dendrogram's branches
assign_dendextend_options
Populates dendextend functions into dendextend_options
assign_values_to_leaves_nodePar
Assign values to nodePar of dendrogram's leaves
Access to dendextend_options
Get or set current defaults for d3dendrogram
Check if numbers are natural
Draw Rectangles Around a Dendrogram's Clusters
Return the leaf Colors of a dendrogram
Last Observation Carried Forward
order.dendrogram<- assignment operator
Shows the significant branches in a dendrogram, based on a pvclust object
untangle_step_rotate_2side
Stepwise untangle two trees one at a time
Add colored bars to a dendrogram
Convert dendrogram Objects to Class hclust
Plot dendrogram to webpage and view.
Which height will result in which k for a dendrogram
Is the object of class hclust
Try to coerce something into a dendlist
Is the object of class dendrogram
Rotates dend based on DendSer
Sorts two clusters vector by their names
Functions for extending dendrogram objects
Tanglegram plot
Pipe an object forward into a function call/expression.
untangle_step_rotate_1side
Stepwise untangle one tree compared to another
Get height attributes from a dendrogram's children