cutree for dendrogram (by 1 height only!)
dendextend_labels.dendrogram
Labels of the Leaves in a Dendrogram
fix_members_attr.dendrogram
Fix members attr in a dendrogram
Measures entanglement between two trees
Get/set attributes of dendrogram's leaves
Check if all the elements in a vector are unique
match_order_dendrogram_by_old_order
Adjust the order of one dendrogram based on another (using order)
branches_attr_by_clusters
Change col/lwd/lty of branches based on clusters
Cut a dendrogram - and run a function on the output
Last Observation Carried Forward
Sort the values level in a vector
Turns a factor into a number
Correlation matrix between a list of trees.
Finds distinct edges in one tree compared to another
Which node id is common to a group of labels
Check if numbers are natural
Calculating Fowlkes-Mallows Index under H0
Counts the number of nodes (Vertices) in a tree
bakers_gamma_for_2_k_matrix
Bakers Gamma for two k matrices
Retrieve/assign cex to the labels of a dendrogram
Color tree's branches according to sub-clusters
Try to coerce something into a dendlist
Counts the number of leaves in a tree
Get height attributes from a dendrogram's children
Raise the height of a dendrogram tree
assign_values_to_nodes_nodePar
Assign values to nodePar of dendrogram's nodes
Duplicate a leaf X times
Bk - Calculating Fowlkes-Mallows Index for two dendrogram
Hang dendrogram leaves
Prunes a tree (using leaves' labels)
all_couple_rotations_at_k
Rotate tree branches for k
Plotting a left-tip-adjusted horizontal dendrogram
Get height attributes from a dendrogram
Get an attribute of the branches of a dendrogram's leaves
Rotate a tree object
Untangle - random search
Creates dendrogram plot using ggplot.
Checks if an object is of class dendlist
unbranch trees
recursivly apply a function on a list
rank_values_with_clusters
Rank a vector based on clusters
Calculating Fowlkes-Mallows Index
Tries to run DendSer on a dendrogram
Plot dendrogram to webpage and view.
Flip leaves
Creating a dendlist object from several dendrograms
Turns a dist object to a "long" table
Identify Clusters in a Dendrogram (not hclust)
Global Comparison of two (or more) dendrograms
Counts the number of terminal nodes (merging 0 nodes!)
order.dendrogram<- assignment operator
Which node is a leaf?
Intersect trees
get attributes from the dendrogram's root(!) branches
untangle_step_rotate_1side
Stepwise untangle one tree compared to another
Color unique labels in a dendrogram
Bk plot - ploting the Fowlkes-Mallows Index of two dendrogram for various k's
assign_values_to_leaves_nodePar
Assign values to nodePar of dendrogram's leaves
assign_values_to_leaves_edgePar
Assign values to edgePar of dendrogram's leaves
Color dend's labels according to sub-clusters
Plots two trees side by side, highlighting edges unique to each tree in red.
Interactively rotate a tree object
Get the colors of the branches of a dendrogram's leaves
Get edgePar of dendrogram's leaves
Tries to run DendSer on a dendrogram
"label" assignment operator
Baker's Gamma correlation coefficient
Access to dendextend_options
Find which nodes satisfies a condition
prune_common_subtrees.dendlist
Prune trees to their common subtrees
The significant branches in a dendrogram, based on a pvclust object
Trims one leaf from a dendrogram
Rotates dend based on DendSer
Sample a tree
Calculating Fowlkes-Mallows index using the profdpm R package
Which height will result in which k for a dendrogram
Random rotation of trees
untangle_step_rotate_2side
Stepwise untangle two trees one at a time
Cophenetic correlation between two trees
Is the object of class phylo
Highlight distint edges in a tree (compared to another one)
Find lowest common branch were the two items are shared
Rank branches' heights
Return the leaf Colors of a dendrogram
Remove all nodePar values from a dendrogram's nodes
Change col/lwd/lty of branches matching labels condition
Collapse branches under a tolerance level
Calculating Fowlkes-Mallows index in R
Find clusters of common subtrees
assign_values_to_branches_edgePar
Assign values to edgePar of dendrogram's branches
Proportion of commong nodes between two trees
Correlation of FM_index for some k
Add colored bars to a dendrogram
Flatten the branches of a dendrogram's root
Is the object of class hclust
Set (/update) features to a dendrogram
cutree for dendrogram (by 1 k value only!)
Ladderize a Tree
Get attributes of dendrogram's nodes
Is the object of class dendrogram
pvclust_show_signif_gradient
Significance gradient of branches in a dendrogram (via pvclust)
Microarray gene expression dataset from Khan et al., 2001. Subset of 306 genes.
Sorts a distance matrix by rows and columns names
Draw Rectangles Around a Dendrogram's Clusters
Remove all nodePar values from a dendrogram's leaves
Fix rank of leaves order values in a dendrogram
Bk permutation - Calculating Fowlkes-Mallows Index for two dendrogram
assign_dendextend_options
Populates dendextend functions into dendextend_options
Topological Distances Between Two dendrograms
Adjust the order of one dendrogram based on another (using labels)
unclass an entire dendrogram tree
Plot a circlized dendrograms
Get the x-y coordinates of a dendrogram's nodes
Ordering of the Leaves in a hclust Dendrogram
A list with labels for each subtree (edge)
untangle dendrograms
Functions for extending dendrogram objects
Checks if the value is and empty list()
Sorts two clusters vector by their names
Creates completely blank theme in ggplot
Remove all edgePar values from a dendrogram's branches
Get nodePar of dendrogram's leaves
Get or set current defaults for d3dendrogram
Pipe an object forward into a function call/expression.
Convert dendrogram Objects to Class hclust
Convert a dendrogram into phylo
Cut a Tree (Dendrogram/hclust/phylo) into Groups of Data
Retrieve/assign colors to the labels of a dendrogram
Tanglegram plot