dendextend-package

dendextend

Offers a set of functions for extending 'dendrogram' objects in R, 
letting you visualize and compare trees of 'hierarchical clusterings'.
You can (1) Adjust a tree's graphical parameters - 
the color, size, type, etc of its branches, nodes and labels.
(2) Visually and statistically compare different 'dendrograms' to one another.

package

dendrogram

clustering

visualization

Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.

Tal Galili

Extending 'dendrogram' Functionality in R

Yoav Benjamini

Gavin Simpson

Gregory Jefferis

Marco Gallotta

Johan Renaudie

The R Core Team 

Kurt Hornik

Uwe Ligges

Andrej-Nikolai Spiess

Steve Horvath

Peter Langfelder

skullkey 

Mark Van Der Loo

Andrie de Vries

Zuguang Gu

Cath 

John Ma

Krzysiek G

Manuela Hummel

Chase Clark

Lucas Graybuck

jdetribol 

Ben Ho

Samuel Perreault

Christian Hennig

David Bradley

Houyun Huang

Patrick Schupp

Alec Buetow

dendextend-package function

Maintainer: Tal Galili <a href="/link/tal.galili%40gmail.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::tal.galili@gmail.com">tal.galili@gmail.com</a> (https://www.r-statistics.com) [copyright holder]
Authors:<ul>
<li>Gregory Jefferis <a href="/link/jefferis%40gmail.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::jefferis@gmail.com">jefferis@gmail.com</a> (imported code from his dendroextras package) [contributor]</li>
</ul>Other contributors:<ul>
<li>Yoav Benjamini <a href="/link/ybenja%40tau.ac.il?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::ybenja@tau.ac.il">ybenja@tau.ac.il</a> [thesis advisor]</li>
<li>Gavin Simpson [contributor]</li>
<li>Marco Gallotta (a.k.a: marcog) [contributor]</li>
<li>Johan Renaudie (https://github.com/plannapus) [contributor]</li>
<li>The R Core Team (Thanks for the Infastructure, and code in the examples) [contributor]</li>
<li>Kurt Hornik [contributor]</li>
<li>Uwe Ligges [contributor]</li>
<li>Andrej-Nikolai Spiess [contributor]</li>
<li>Steve Horvath <a href="/link/SHorvath%40mednet.ucla.edu?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::SHorvath@mednet.ucla.edu">SHorvath@mednet.ucla.edu</a> [contributor]</li>
<li>Peter Langfelder <a href="/link/Peter.Langfelder%40gmail.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::Peter.Langfelder@gmail.com">Peter.Langfelder@gmail.com</a> [contributor]</li>
<li>skullkey [contributor]</li>
<li>Mark Van Der Loo <a href="/link/mark.vanderloo%40gmail.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::mark.vanderloo@gmail.com">mark.vanderloo@gmail.com</a> (https://github.com/markvanderloo d3dendrogram) [contributor]</li>
<li>Andrie de Vries <a href="/link/apdevries%40gmail.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::apdevries@gmail.com">apdevries@gmail.com</a> (ggdendro author) [contributor]</li>
<li>Zuguang Gu <a href="/link/z.gu%40dkfz-heidelberg.de?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::z.gu@dkfz-heidelberg.de">z.gu@dkfz-heidelberg.de</a> (circlize author) [contributor]</li>
<li>Cath (https://github.com/CathG) [contributor]</li>
<li>John Ma (https://github.com/JohnMCMa) [contributor]</li>
<li>Krzysiek G (https://github.com/storaged) [contributor]</li>
<li>Manuela Hummel <a href="/link/m.hummel%40dkfz.de?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::m.hummel@dkfz.de">m.hummel@dkfz.de</a> (https://github.com/hummelma) [contributor]</li>
<li>Chase Clark (https://github.com/chasemc) [contributor]</li>
<li>Lucas Graybuck (https://github.com/hypercompetent) [contributor]</li>
<li>jdetribol (https://github.com/jdetribol) [contributor]</li>
<li>Ben Ho <a href="/link/ben.ho%40sickkids.ca?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::ben.ho@sickkids.ca">ben.ho@sickkids.ca</a> (https://github.com/SplitInf) [contributor]</li>
<li>Samuel Perreault <a href="/link/samuel.perreault.3%40ulaval.ca?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::samuel.perreault.3@ulaval.ca">samuel.perreault.3@ulaval.ca</a> (https://github.com/samperochkin) [contributor]</li>
<li>Christian Hennig <a href="/link/c.hennig%40ucl.ac.uk?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::c.hennig@ucl.ac.uk">c.hennig@ucl.ac.uk</a> (http://www.homepages.ucl.ac.uk/~ucakche/) [contributor]</li>
<li>David Bradley (https://github.com/DBradley27) [contributor]</li>
<li>Houyun Huang <a href="/link/houyunhuang%40163.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::houyunhuang@163.com">houyunhuang@163.com</a> (https://github.com/houyunhuang) [contributor]</li>
<li>Patrick Schupp <a href="/link/pschupp%40sonic.net?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::pschupp@sonic.net">pschupp@sonic.net</a> (https://github.com/pschupp) [contributor]</li>
<li>Alec Buetow <a href="/link/alecbuetow%40gmail.com?package=dendextend&version=1.19.1" data-mini-rdoc="dendextend::alecbuetow@gmail.com">alecbuetow@gmail.com</a> (https://github.com/alecbuetow) [contributor]</li>
</ul>

Author

Functions for extending dendrogram objects — dendextend-package

Maintainer: Tal Galili <a href='mailto:tal.galili@gmail.com'>tal.galili@gmail.com</a> (https://www.r-statistics.com) [copyright holder]
Authors:<ul>
<li>Gregory Jefferis <a href='mailto:jefferis@gmail.com'>jefferis@gmail.com</a> (imported code from his dendroextras package) [contributor]</li>
</ul>

Other contributors:<ul>
<li>Yoav Benjamini <a href='mailto:ybenja@tau.ac.il'>ybenja@tau.ac.il</a> [thesis advisor]</li>
<li>Gavin Simpson [contributor]</li>
<li>Marco Gallotta (a.k.a: marcog) [contributor]</li>
<li>Johan Renaudie (https://github.com/plannapus) [contributor]</li>
<li>The R Core Team (Thanks for the Infastructure, and code in the examples) [contributor]</li>
<li>Kurt Hornik [contributor]</li>
<li>Uwe Ligges [contributor]</li>
<li>Andrej-Nikolai Spiess [contributor]</li>
<li>Steve Horvath <a href='mailto:SHorvath@mednet.ucla.edu'>SHorvath@mednet.ucla.edu</a> [contributor]</li>
<li>Peter Langfelder <a href='mailto:Peter.Langfelder@gmail.com'>Peter.Langfelder@gmail.com</a> [contributor]</li>
<li>skullkey [contributor]</li>
<li>Mark Van Der Loo <a href='mailto:mark.vanderloo@gmail.com'>mark.vanderloo@gmail.com</a> (https://github.com/markvanderloo d3dendrogram) [contributor]</li>
<li>Andrie de Vries <a href='mailto:apdevries@gmail.com'>apdevries@gmail.com</a> (ggdendro author) [contributor]</li>
<li>Zuguang Gu <a href='mailto:z.gu@dkfz-heidelberg.de'>z.gu@dkfz-heidelberg.de</a> (circlize author) [contributor]</li>
<li>Cath (https://github.com/CathG) [contributor]</li>
<li>John Ma (https://github.com/JohnMCMa) [contributor]</li>
<li>Krzysiek G (https://github.com/storaged) [contributor]</li>
<li>Manuela Hummel <a href='mailto:m.hummel@dkfz.de'>m.hummel@dkfz.de</a> (https://github.com/hummelma) [contributor]</li>
<li>Chase Clark (https://github.com/chasemc) [contributor]</li>
<li>Lucas Graybuck (https://github.com/hypercompetent) [contributor]</li>
<li>jdetribol (https://github.com/jdetribol) [contributor]</li>
<li>Ben Ho <a href='mailto:ben.ho@sickkids.ca'>ben.ho@sickkids.ca</a> (https://github.com/SplitInf) [contributor]</li>
<li>Samuel Perreault <a href='mailto:samuel.perreault.3@ulaval.ca'>samuel.perreault.3@ulaval.ca</a> (https://github.com/samperochkin) [contributor]</li>
<li>Christian Hennig <a href='mailto:c.hennig@ucl.ac.uk'>c.hennig@ucl.ac.uk</a> (http://www.homepages.ucl.ac.uk/~ucakche/) [contributor]</li>
<li>David Bradley (https://github.com/DBradley27) [contributor]</li>
<li>Houyun Huang <a href='mailto:houyunhuang@163.com'>houyunhuang@163.com</a> (https://github.com/houyunhuang) [contributor]</li>
<li>Patrick Schupp <a href='mailto:pschupp@sonic.net'>pschupp@sonic.net</a> (https://github.com/pschupp) [contributor]</li>
<li>Alec Buetow <a href='mailto:alecbuetow@gmail.com'>alecbuetow@gmail.com</a> (https://github.com/alecbuetow) [contributor]</li>
</ul>

Functions for extending dendrogram objects

dendextend-package: Functions for extending dendrogram objects

Description

Arguments

Author

See Also