dendroNetwork (version 0.5.5)

cyto_create_gn_style: Create Girvan-Newman communities style in Cytoscape

Description

Function to create a style in Cytoscape to visualise the communities in a network using the Girvan-Newman method for community detection. Each node is filled with a separate colour for each community. Before starting this function, Cytoscape must be up and running!

Usage

cyto_create_gn_style(graph_input, gn_coms = NULL, style_name = "auto")

Value

The style applied in Cytoscape, no objects in R as return.

Arguments

graph_input

the graph with the CPM communities

gn_coms

GN communities in graph_input. This is the result of gn_names(). If this is not given this will be calculated in the function

style_name

name of the output style in Cytoscape. If set to "auto", the style is derived from the name of the network and value for k

Examples

if (FALSE) {
data(hol_rom)
sim_table_hol <- sim_table(hol_rom)
g_hol <- dendro_network(sim_table_hol)
g_hol_gn <- gn_names(g_hol)
cyto_create_graph(g_hol)
cyto_create_gn_style(g_hol, gn_coms = g_hol_gn)
}