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dendsort

Modular Leaf Ordering Methods for Dendrogram Nodes

More information on this package can be found on CRAN here.

This is a forked repo from dendsort version 0.3.3, which were made given updates to CRAN dependencies. The original sourcecode by the author Ryo Sakai can be found on Bitbucket here. The only changes made to this version were related to the vignettes.

Vignettes

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Citation

For more information on the method, please the F1000 article here:

Sakai R, Winand R, Verbeiren T et al. 
dendsort: modular leaf ordering methods for dendrogram representations in R.
F1000Research 2014, 3:177 (https://doi.org/10.12688/f1000research.4784.1)

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Install

install.packages('dendsort')

Monthly Downloads

2,890

Version

0.3.4

License

GPL-2 | GPL-3

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Maintainer

Evan Biederstedt

Last Published

April 20th, 2021

Functions in dendsort (0.3.4)

cal_length

Recursive function to calculate the length of branches
dendsort

Sorting and reordering dendrogram nodes
dendsort-package

Modular Leaf Ordering Methods for Dendrogram Nodes
cal_total_length

Calculate the total length of lines to draw the dendrogram
sort_smallest_r

Sorting and reordering dendrogram nodes by the smallest value in reverse
sort_smallest

Sorting and reordering dendrogram nodes by the smallest value
sort_average_r

Sorting and reordering dendrogram nodes by average distances in reverse
sort_average

Sorting and reordering dendrogram nodes by average distances
sample_tcga

Sample data matrix from the integrated pathway analysis of gastric cancer from the Cancer Genome Atlas (TCGA) study
cal_node_limit

Calculate the x coordinates given a branch of dendrogram