denim

denim-package

Simulate deterministic discrete time model

R package to build and simulate deterministic discrete-time compartmental models that can be non-Markov. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).

Anh Phan Truong Quynh

Generate and Simulate Deterministic Discrete-Time Compartmental
Models

Thinh Ong

Anh Phan

Marc Choisy

Niels Lohman

Bjoern Hoehrmann

Florian Loitsch

Ingo Berg

denim-package function

Maintainer: Anh Phan <a href="/link/anhptq%40oucru.org?package=denim&version=1.2.1" data-mini-rdoc="denim::anhptq@oucru.org">anhptq@oucru.org</a> (<a href="https://orcid.org/0009-0000-2129-435X">ORCID</a>)
Authors:<ul>
<li>Thinh Ong <a href="/link/thinhop%40oucru.org?package=denim&version=1.2.1" data-mini-rdoc="denim::thinhop@oucru.org">thinhop@oucru.org</a> (<a href="https://orcid.org/0000-0001-6772-9291">ORCID</a>) [copyright holder]</li>
<li>Marc Choisy <a href="/link/mchoisy%40oucru.org?package=denim&version=1.2.1" data-mini-rdoc="denim::mchoisy@oucru.org">mchoisy@oucru.org</a> (<a href="https://orcid.org/0000-0002-5187-6390">ORCID</a>)</li>
</ul>Other contributors:<ul>
<li>Niels Lohman [contributor]</li>
<li>Bjoern Hoehrmann <a href="/link/bjoern%40hoehrmann.de?package=denim&version=1.2.1" data-mini-rdoc="denim::bjoern@hoehrmann.de">bjoern@hoehrmann.de</a> [contributor]</li>
<li>Florian Loitsch [contributor]</li>
<li>Ingo Berg [contributor]</li>
</ul>

Author

denim — denim-package

Maintainer: Anh Phan <a href='mailto:anhptq@oucru.org'>anhptq@oucru.org</a> (<a href='https://orcid.org/0009-0000-2129-435X'>ORCID</a>)
Authors:<ul>
<li>Thinh Ong <a href='mailto:thinhop@oucru.org'>thinhop@oucru.org</a> (<a href='https://orcid.org/0000-0001-6772-9291'>ORCID</a>) [copyright holder]</li>
<li>Marc Choisy <a href='mailto:mchoisy@oucru.org'>mchoisy@oucru.org</a> (<a href='https://orcid.org/0000-0002-5187-6390'>ORCID</a>)</li>
</ul>

Other contributors:<ul>
<li>Niels Lohman [contributor]</li>
<li>Bjoern Hoehrmann <a href='mailto:bjoern@hoehrmann.de'>bjoern@hoehrmann.de</a> [contributor]</li>
<li>Florian Loitsch [contributor]</li>
<li>Ingo Berg [contributor]</li>
</ul>

denim-package: denim

Description

Arguments

Author

Details

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