setOutput

setOutput,readsData-method

object

A list of the output from Bayesian inference.

outval

Updates the value of the output slot for the readsData object supplied.

internal

Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), <http://www.pnas.org/content/109/39/15865.full>, and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.

Gershom Buri

denoiSeq

Differential Expression Analysis Using a Bottom-Up Model

Wilfred Ndifon

setOutput function

<ul>
<li><code>readsData</code>: Alters the value of the output slot of
the readsData object.</li>
</ul>

setOutput: Generic for the altering output slot.

Description

Usage

Arguments

Value

Methods (by class)